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Will Pro EZGC Chromatography Modeling Software Work For You? We Put It to the Test!


Method development is hard. As any analyst will tell you, it takes time—and a lot of trial and error—even for the most experienced chromatographer. Wouldn’t it be convenient if there were a tool that allowed you to develop optimized GC methods in just a matter of seconds? Restek’s Pro EZGC chromatogram modeling software is just such a tool! It provides GC column recommendations as well as the tailored set of conditions you need without the hours of experimentation, saving you time, material costs, and lots of frustration.

To demonstrate the power of the Pro EZGC chromatogram simulator, we used a few examples of analyses conducted in our labs to test the accuracy of the GC modeling software’s predictions. Using the same analytical run conditions as in the empirical work, will the modeler produce a simulated chromatogram that matches real-world results? Our examples span a variety of chemical classes and column phases to demonstrate how the Pro EZGC modeling software is valid for a wide range of applications.

While these examples pit the performance of the Pro EZGC chromatogram simulator against experimentally established instrumental conditions with the goal of showing just how closely the modeled results match the data generated empirically, the real power of the Pro EZGC modeler is its ability to provide optimized analytical conditions using only a list of compounds. The demonstration presented here illustrates the accuracy of the underlying principles that power the modeler, so that when using the Pro EZGC chromatogram simulator to create your next method from scratch, you will have confidence its predictions will be remarkably close to the actual chromatography you'll obtain when you try it out on your GC.

Before we get started, there are a few things to keep in mind when comparing empirical results to modeled chromatograms. First, any differences in peak heights are due to the model’s random generation of height; without information regarding compound concentrations and detector sensitivities, it is impossible to accurately predict the relative peak heights for the compounds modeled. Second, the software ideally predicts resolutions (R) of 1.5 or higher because an R of 1.5 means two peaks have been baseline resolved. In instances where it isn’t possible to have baseline resolution, the model highlights those resolution values in either yellow or red in the peak table list, depending on how far the predicted value is from an ideal R of 1.5. Figure 1 illustrates the typical output that is provided by the modeling software.

Figure 1: Just input your analyte list, and the Pro EZGC chromatogram simulator delivers a customized, interactive model chromatogram that provides a specific phase, column dimension, and conditions. You can change columns, modify conditions, zoom in, view chemical structures, and even overlay mass spectra of coeluting compounds.


Example 1: Ensure the Separation of Critical Compounds with Pro EZGC Simulations

Some compounds are difficult to separate because they are very similar, yet their chromatographic resolution may be required. For example, the isomers benzo[b]fluoranthene, benzo[k]fluoranthene, and benzo[j]fluoranthene coelute on many stationary phases, but they must be resolved chromatographically for accurate reporting because the mass spectrometer can’t distinguish them spectrally. In Figure 2, you can see that the modeled results closely match the empirical results in terms of relative peak resolution. Actual retention times may shift slightly due to differences in the temperature calibration between the experimental instrument and the one used to develop the modeler’s compound libraries; however, even with small retention time shifts, the Pro EZGC chromatogram modeler accurately predicted this critical resolution under the same conditions. Imagine the method development time that could be saved by using GC modeling software to establish conditions that ensure key separations instead of spending time testing conditions in the lab!

Figure 2: The Pro EZGC chromatogram simulator correctly models critical separations.

ColumnRxi-17Sil MS, 15 m, 0.25 mm ID, 0.25 µm (cat.# 14120)
Diluent:Methylene chloride
Conc.:20 ng/µL
Inj. Vol.:1 µL split (split ratio 20:1)
Liner:4 mm split Precision liner w/wool
Inj. Temp.:275 °C
Split Vent Flow Rate:42 mL/min.
Oven Temp.:80 °C (hold 1 min) to 320 °C at 15 °C/min (hold 2 min)
Carrier GasH2, constant flow
Flow Rate:2 mL/min
DetectorFID @ 340 °C
Constant Column + Constant Make-up:50 mL/min
Make-up Gas Type:N2
Data Rate:20 Hz
InstrumentAgilent/HP6890 GC
NotesLiner cat.# 21022 was used to produce this chromatogram, but has since been discontinued. For assistance choosing a replacement for this application, contact Restek Technical Service or your local Restek representative.

Example 2: Determine if QC Requirements Can Be Met

Performance-based requirements are critical and finding method conditions that meet them during development can be a challenge. For instance, if you are developing a GC-MS method for a list of compounds that contain isobaric analytes, chromatographic resolution is essential. In the example shown in Figure 3, the polychlorinated biphenyl (PCB) congeners PCB 28 and PCB 31 must be resolved in order to be detected because the mass spectrometer would not be able to distinguish one from the other. You can see that the Pro EZGC modeling software predicted the necessary separation shown in the empirical data. The Pro EZGC chromatogram simulator even accurately accounts for the vacuum the mass spectrometer is drawing at the end of the column. Using GC modeling software during method development to simulate critical separations helps ensure that QC performance requirements will be met during actual sample analysis.

Figure 3: Using GC modeling software for method development assures performance criteria will be met.

ColumnRxi-XLB, 30 m, 0.25 mm ID, 0.25 µm (cat.# 13723)
Standard/SamplePCB congener standard #2 (cat.# 32294)
PCB 31 (custom)
Conc.:3.5 ppm
Inj. Vol.:0.5 µL splitless (hold 1.75 min)
Liner:2.0 mm ID straight inlet liner w/wool (cat.# 21718)
Inj. Temp.:300 °C
Purge Flow:50 mL/min
Oven Temp.:40 °C (hold 2 min) to 240 °C at 30 °C/min (hold 2 min) to 340 °C at 10 °C/min (hold 5 min)
Carrier GasHe, constant flow
Flow Rate:1 mL/min
Transfer Line Temp.:300 °C
Analyzer Type:Quadrupole
Source Temp.:280 °C
Electron Energy:70 eV
Ionization Mode:EI
Scan Range:45-550 amu
Scan Rate:5 scans/sec
InstrumentPE Clarus 500 GC & Clarus 500 MS

Example 3: Pro EZGC Software Predicts Correct Elution Order and Relative Retention Times, Even for Sensitive Compounds

The elution of some compounds is very sensitive to column characteristics and conditions. Can GC modeling software accurately simulate elution order and relative retention times in these cases? The example in Figure 4 demonstrates that the Pro EZGC chromatogram simulator predicted the correct elution order and relative retention times for a set of pesticides that are notoriously sensitive to column conditions. The Pro EZGC software even achieves very similar resolution values compared to the experimental data. For GC method development, this means that method performance can be accurately predicted in minutes from your desk instead of by spending hours fine-tuning separations at the bench.

Figure 4: The elution of sensitive compounds can be accurately predicted using Restek’s Pro EZGC chromatogram simulator.

PeakstR (min)Conc.
1.EPTC 8.462100
PeakstR (min)Conc.
ColumnRtx-440, 30 m, 0.25 mm ID, 0.25 µm (cat.# 12923)
Standard/SampleMinnesota Ag List 1 pesticide kit (cat.# 32408)
Conc.:100 ppm
Inj. Vol.:1 µL split (split ratio 25:1)
Liner:Premium 4 mm Precision liner w/wool (cat.# 23305)
Inj. Temp.:300 °C
Oven Temp.:100 °C (hold 0.5 min) to 175 °C at 4 °C/min to 250 °C at 14.5 °C/min
Carrier GasHe, constant flow
Flow Rate:2.0 mL/min
Scan Program:
GroupStart Time
Scan Range
Scan Rate
Transfer Line Temp.:300 °C
Analyzer Type:Quadrupole
Source Type:Inert
Drawout Plate:6 mm ID
Source Temp.:250 °C
Quad Temp.:180 °C
Electron Energy:70 eV
Solvent Delay Time:1.6 min
Tune Type:PFTBA
Ionization Mode:EI
InstrumentAgilent 7890A GC & 5975C MSD

Example 4: Wide Variety of Column Phases in the Pro EZGC Modeler Lets You Try before Buying

Numerous GC column stationary phases have been developed over the years because their distinct selectivities provide important differences in separations. Different phases can provide improved chromatographic performance for specific analytes and, in some cases, initial results must be confirmed via an analysis on a secondary column of different selectivity. Confirmation analysis with a second column that provides retention time and elution order changes is often performed when using some detectors, such as FIDs or ECDs, because a greater degree of confidence is achieved when target analytes are observed in both analyses.

The Pro EZGC chromatogram simulator includes a wide range of column phases (Table I) that differ significantly in selectivity. Because Pro EZGC modeling software includes a diverse range of compound libraries and column phases, GC method developers can use the tool to test the performance of different columns and buy only the ones that provide optimal selectivity for their own specific target analytes.

Table I: Current phases and compound libraries available in the Pro EZGC chromatogram modeler.


Compound Classes


Flavors & Fragrances

Rxi-17Sil MS

Polycyclic Aromatic Hydrocarbons (PAHs), Flavors & Fragrances

Rxi-35Sil MS


Rxi-5Sil MS

Polychlorinated Biphenyls (PCBs), Semivolatile Organic Compounds (SVOCs)


Semivolatile Organic Compounds (SVOCs), Pesticides

Rxi-624Sil MS

Volatile Organic Compounds (VOCs)


Polycyclic Aromatic Hydrocarbons (PAHs)


Polychlorinated Biphenyls (PCBs)


Solvents, Flavors & Fragrances, Drugs, Pesticides, Volatile Organic Compounds (VOCs)


Flame Retardants (FRs)






Drugs, Pesticides, Herbicides, Polychlorinated Biphenyls (PCBs)


Pesticides & Herbicides, Polychlorinated Biphenyls (PCBs)


Drugs, Pesticides, Herbicides, Semivolatile Organic Compounds (SVOCs)


Drugs, Pesticides, Polychlorinated Biphenyls (PCBs)


Volatile Organic Compounds (VOCs), Solvents


Volatile Organic Compounds (VOCs)






Organophosphorus Pesticides (OPPs)


Organophosphorus Pesticides (OPPs)


Polychlorinated Biphenyls (PCBs), Pesticides


Volatile Organic Compounds (VOCs), Halocarbons, Hydrocarbons, Alcohols, Aldehydes, Ethers & Esters, "Acetates Plus," Glycol Ethers, Alkanes


Volatile Organic Compounds (VOCs)


Pesticides & Semivolatile Organic Compounds (SVOCs)


Food Fatty Acid Methyl Esters (FAMEs)


Fatty Acid Methyl Esters (FAMEs)


Solvents, Flavors & Fragrances, Fatty Acid Methyl Esters (FAMEs)


Example 5: Pro EZGC Chromatogram Simulator Gives an Excellent Overall Match, Even for Different Experimental Setups

This final example illustrates that some experimental setups will generate slightly different results than the Pro EZGC model but, even in these situations, the match is excellent and provides a great starting place for GC method development. The Pro EZGC modeling software assumes an ideal split/splitless sample introduction onto the column, so in a case where the actual sample was introduced via headspace with a sampling loop, there are differences in retention time that result from the additional time required to transfer the sample to the column. Peak widths may also increase due to band broadening that occurs during the sample introduction process. As shown in Figure 5, despite these differences, the Pro EZGC chromatogram simulator produces a very close match to the experimental separation in terms of relative peak resolution. This allows method developers, who will ultimately use a different sample introduction technique, to still benefit from using Pro EZGC modeling software.

Figure 5: While exact retention times shifted due to the use of a headspace sampling loop, the overall separation predicted by the Pro EZGC chromatogram modeler is very close to the actual experimental results.

ColumnRxi-624Sil MS, 30 m, 0.32 mm ID, 1.80 µm (cat.# 13870)
Standard/SampleResidual solvents Class 2 — Mix A (2013 Rev) (cat.# 36012)
Inj. Vol.:1,000 µL headspace-loop split (split ratio 5:1)
Liner:Premium 1.0 mm ID straight inlet liner (cat.# 23333)
Inj. Port Temp.:140 °C
Instrument:Tekmar HT-3
Inj. Time:1.0 min
Transfer Line Temp.:105 °C
Valve Oven Temp.:105 °C
Needle Temp.:85 °C
Sample Temp.:80 °C
Sample Equil. Time:60 min
Mixer time:5.0 min
Mixing level:5
Mixer stabilize time:0.50 min
Vial Pressure:10 psi
Pressurize Time:5.0 min
Pressure Equilibration Time:0.20 min
Loop Pressure:5.0 psi
Loop Fill Time:2.0 min
Oven Temp.:40 °C (hold 20 min) to 240 °C at 10 °C/min (hold 20 min)
Carrier GasHe, constant flow
Flow Rate:2.2 mL/min
DetectorFID @ 250 °C
Make-up Gas Flow Rate:45 mL/min
Make-up Gas Type:N2
Hydrogen flow:40 mL/min
Air flow:450 mL/min
Data Rate:20 Hz
InstrumentAgilent/HP6890 GC

When Models Meet Reality

When it comes to accurately predicting the chromatographic performance of a set of compounds on a given GC column under certain conditions, nothing beats Pro EZGC modeling software. Restek’s chemists use it extensively to develop applications and, despite the fact that some real-world situations, such as sample introduction via headspace transfer lines or inaccurate flow rates, introduce variables that may require slight adjustments from the modeled results, the Pro EZGC chromatogram simulator still arrives at a modeled chromatogram and a set of conditions that serve as excellent starting conditions for any further method refinement that may be necessary.

Try it yourself for free!

All of the examples shown here are cases where the model was able to replicate empirical results with impressive accuracy. If you have a list of compounds, get started using our free Pro EZGC modeling software, and let Restek’s years of chromatographic experience do the work for you! GC method development has never been so easy.